11th Annual Users Meeting 2016

09:30 - 10:00

Morning registration with tea/coffee

10:00 - 11:30

Lightning Talks by members of the community

11:30 - 12:00

Glencoe Software Update

Chris Allan, Glencoe Software

12:00 - 13:00

Lunch

13:00 - 13:10

Welcome

13:10 - 14:00

OME Project Summary and Progress

Jason Swedlow, OME

14:00 - 14:30

Image Data Integration and Publication at Scale: Update on the IDR

Josh Moore and Eleanor Williams, OME

14:30 - 15:00

Help! Everything is Big Data Now. OMERO to the Rescue...

Ilan Davis, University of Oxford

15:00 - 15:30

Tea/coffee

15:30 - 16:00

Building an Image Management Core at Harvard Medical School using OMERO

Douglas Russell, Harvard Medical School

16:00 - 16:30

Alone in the Dark Making Big Data

Luke Hammond, Queensland Brain Institute

16:30 - 17:00

The Allen Institute for Cell Science: Building a Microscope Pipeline to Map the Human Cell

Winfried Wiegraebe, Allen Institute for Cell Science

17:00 - 17:15

One minute poster talks

17:15 - 18:30

Poster session with refreshments

19.00

Dinner

09:15 - 10:30

Workshops - Round 1

• Room 1 - Working with OMERO/OMERO for Users
• Informal demonstrations of OMERO.insight and OMERO.web
• Informal demonstrations of other tools developed by the OME consortium e.g. FLIMfit, ImageJ
• Discussions as requested on integrating your own tools: Java, Python etc.
• Discussions as requested on using/customizing training materials

• Room 2 - @Scale: Technologies for managing OMERO
• Introduction to OMERO at scale
• Tools for configuration, testing and deployment management (e.g. Docker) ( Movie version)
• Image Data Repository (IDR) case study (OpenStack, GPFS, public web, caching) ( Movie version)

• Room 3 - Working with Bio-Formats (developer-aimed session)
• Introduction to working with Bio-Formats ( Movie version)
• OME File Formats ( Movie version)
• Breakout sessions on working with Bio-Formats in Java & MATLAB
• Working with large datasets

• Room 4 - Chill-out room - space for informal discussion etc

10:30 - 11:00

Tea/coffee & refreshments

11:00 - 12:30

Workshops - Round 2

• Room 1 - OMERO for Users
• Informal demonstrations of OMERO.insight and OMERO.web
• Informal demonstrations of other tools developed by the OME consortium e.g. FLIMfit, ImageJ
• Discussions as requested on integrating your own tools: Java, Python etc.
• Discussions as requested on using/customizing training materials

• Room 2 - @Scale: Extensible Import in OMERO
• Extensible Import in OMERO ( Movie version)
• Importing data with rich metadata @scale ( Movie version)

• Room 3 - Configuring public OMERO.web
• Public Repository: permissions, deployment & customization ( Movie version)
• OMERO.web plugins and extensions

• Room 4 - Chill-out room - space for informal discussion etc

12:30 - 14:00

Lunch

14:00 - 15:15

Workshops - Round 3

• Room 1 - OMERO for Users
• Open discussion and catch up on any demonstrations you missed in the morning

• Room 2 - @Scale: Interacting with your data in OMERO
• Interacting with your data in OMERO (CLI) ( Movie version)
• Interacting with your data in OMERO @scale (Scripts, Jupyter) (Webinar) (Jupyter notebooks)

• Room 3 - OMERO.figure
• Design and use of OMERO.figure ( Movie version)

• Room 4 - Chill-out room - space for informal discussion etc

15:15 - 15:45

Tea/coffee & refreshments

15:45 - 17:00

Josh's Annual Priorities Game

17.00

Wine tasting

09.00 - 15.00

Participant-driven meeting, including lunch break (notes available here)

15.00 - 16.00

Summary session