8th Annual Users Meeting 2013
The 8th Annual OME Users Meeting was held at Institut Pasteur in Paris on June 24-25 2013.
Day 1 — Monday 24th June, 2013
08:30 - 09:00
Registration & coffee
09:00 - 09:15
Welcome
Jason Swedlow & Spencer Shorte
09:15 - 09:30
Overview of OME/Update & Bio-Formats & OMERO
Jason Swedlow, University of Dundee
09:30 - 09:45
ImageJ & OME
Kevin Eliceiri, University Wisconsin-Madison
09:45 - 10:00
Tracking with OMERO
Sebastien Besson, Harvard Medical School
10:00 - 10:15
Project Update - Goldberg Lab
Ilya Goldberg, NIA Baltimore
10:15 - 10:30
OMERO.searcher
Ivan Cao-Berg, Carnegie Mellon University
10:30 - 11:00
Coffee & Refreshments
11:00 - 11:15
Fluorescence Lifetime Imaging (FLIM) & OMERO
Ian Munro, Imperial College London
11:15 - 11:30
Hierarchial Data, Tagging and Search
Douglas Russell, University of Oxford
11:30 - 11:45
Leading a horse to water, but will it drink?
Julien Jourde, Institut Pasteur
11:45 - 12:00
Extending OMERO to Support Non-image Data
Gianluigi Zanetti, CRS4, Sardinia
12:00 - 12:15
OMERO & Atlas Informatics
Bill Hill, MRC Edinburgh
12:15 - 13:00
Question & Answer Session
13:00 - 14:00
Group Photo & Lunch
14:00 - 14:30
The JCB DataViewer: Bringing New Dimensions to Published Image Data
Liz Williams, The Rockefeller University Press
14:30 - 15:00
The Knockout Mouse Project (KOMP): Phenotyping, and the Data Management Challenge
James Denegre, The Jackson Laboratory
15:00 - 15:30
Automated image analysis using OMERO scripts
Alex Herbert, University of Sussex
15:30 - 16:00
Coffee & Refreshments
16:00 - 16:30
The Original Data Repository and other OME/OMERO applications at the Stowers Institute
Winfried Wiegraebe, Stowers Institute
16:30 - 17:00
Towards open development of microscopy and image analysis applications with ZEN software and .czi file format by Carl Zeiss
Olaf Selchow & Markus Neumann, Carl Zeiss Microscopy GmbH
17:00 - 17:45
Question & Answer Session, Summary and Close
17:45 - 19:30
Drinks Reception & Poster Session
Day 2 — Tuesday 25th June, 2013
08:30 - 09:00
Coffee & Refreshments
09:00 - 09:15
Welcome
Jason Swedlow, University of Dundee
09:15 - 10:30
Workshops - Round 1
- Installing OMERO for Real - How to configure an installation for your institution, E.g. LDAP, File Systems etc.
- Demo of latest desktop and web clients / Permissions / Publishing data/ Usability
- OMERO.FS - What the FS changes mean for admins & users
- Analysis with OMERO - Scripting, ImageJ, MATLAB, Extending the Web UI etc.
10:30 - 11:00
Coffee & Refreshments
11:15 - 12:45
Workshops - Round 2
- Installing OMERO for Real - How to configure an installation for your institution, E.g. LDAP, File Systems etc.
- Demo of latest desktop and web clients / Permissions / Publishing data/ Usability
- OMERO.FS - What the FS changes mean for admins & users
- Analysis with OMERO - Scripting, ImageJ, MATLAB, Extending the Web UI etc.
13:30 - 14:45
Workshops - Round 3
- Informal software demonstrations. Your chance to meet and discuss with OME Consortium Developers
14:45 - 15:15
Coffee & Refreshments
15:15 - 16:30
Workshops - Round 4
- Informal software demonstrations. Your chance to meet and discuss with OME Consortium Developers
16:30 - 17:00
Summary & Close
Jason Swedlow, University of Dundee
