9th Annual Users Meeting 2014

The 9th Annual OME Users Meeting was held at Institut Pasteur in Paris on June 5-6 2014.

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Day 1 — Thursday 5th June, 2014

13:00 - 14:00

Buffet lunch

14:00 - 14:30

Registration

14:30 - 14:40

Welcome and introduction

Spencer Shorte, Institut Pasteur

14:40 - 15:30

OME Project Summary and Progress

Jason Swedlow, University of Dundee

15:30 - 16:00

Bio-Imaging for the International Mouse Phenotyping Consortium

Gautier Koscielny, EBI

16:00 - 16:30

Tea/coffee & refreshments

16:30 - 17:00

openBIS Importer Toolset (oBIT)

Aaron Ponti, ETH Zurich

17:00 - 17:30

Integrating OMERO into a correlative microscopy workflow: successes and struggles

Damir Sudar, Lawrence Berkeley Lab

17:30 - 18:00

Towards Precision Medicine: Translational Diagnostics, Feasibility Research and OME

Karl Garsha, Ventana Medical Systems

18:00 - 18:30

The JCB DataViewer: Bringing new dimensions to published image data

Liz Williams, The Rockefeller University Press

18:30 - 18:45

Poster lightning talks

18:45 onwards

Buffet Dinner and Poster session

Day 2 — Friday 6th June, 2014

The plan for the workshops this year is to be informal and as responsive to your needs as we can manage. Please feel free to approach a member of the team with your questions or to request a demonstration of the OMERO clients or specific functionality. If you need to leave early and want a specific topic covered earlier than it is listed in the programme, please let the workshop leaders know as early as possible and we'll do our best to accommodate you.

08:30 - 09:00

Tea/coffee & refreshments

09:00 - 09:15

Welcome

Jason Swedlow, University of Dundee

09:15 - 10:30

Workshops - Round 1

Room 1 - Working with OMERO.web
Presentation on customizing and extending OMERO.web with your own configuration and apps, followed by demonstrations of 'Virtual Microscope' and OMERO.figure

Room 2 - Administering OMERO in the real world
Troubleshooting your specific issues (note that our sysadmin will also be available for the rest of day)

Room 3 - Acquisition and Analysis - how to integrate your tools
Presentations and demonstrations of integrated tools such as CellProfiler, FLIMfit, ImageJ, μManager, OMERO.webtagging and OMERO.searcher, as well as various MATLAB-based tools and Python scripting examples

10:30 - 11:00

Tea/coffee & refreshments

11:00 - 12:15

Workshops - Round 2

Room 1 - Working with OMERO.web Part 2
OMERO.web apps and further demonstrations as requested, see also the Acquisition and Analysis workshop

Room 2 - Managing imports with OMERO 5
Changes since OMERO 4 and discussion of import scenarios, migration and advanced admin issues

Room 3 - Acquisition and Analysis Part 2
Further demonstrations and discussion as requested, see also the OMERO.web workshop

12:15 - 13:30

Lunch

13:30 - 16:00

Workshops - Round 3

Informal software demonstrations and open discussion time. Your chance to meet and discuss with OME Consortium Developers or catch up on a demo you missed in the morning

14:45 - 15:15

Tea/coffee & refreshments

16:00 - 16:30

Summary & close

Jason Swedlow, University of Dundee

OME source code is available under the GNU General public license or more permissive open source licenses, or through commercial license from Glencoe Software Inc.
OME, Bio-Formats, OMERO, IDR and their associated logos are trademarks of Glencoe Software Inc., which holds these marks to protect them on behalf of the OME community.

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