The OME Team gave two seminars and two practical sessions on OMERO and IDR as a part of the ABiS-GBI course held in Japan.
OMERO, a component of OME, is a software platform for image data management and analysis which was presented in this course. Import, organisation, viewing, searching, annotation and publishing of imaging data with OMERO were shown.
Further, the Image Data Resource (IDR) was introduced, concentrating on the submission workflow and explaining the value of curation for this added-value resource.
During the second day, we showed how to transition from manual data processing to automated processing workflows using applications against the OMERO API, how to integrate a variety of processing tools with OMERO such as Fiji/ImageJ and Cellpose and how to automatically generate output ready for publication.
The presentations and the walkthrough for the seminars and OMERO workshop and the repository with Jupyter notebooks.
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Version: 2024.11.14