2019-10-08

Dundee: N/A

Remote: Mark, Josh, Simon, J-m, Melissa, Chris, David, Frances, Will, Wilma, Liza, Andreas

Start: 2:00 pm

1. Accepting minutes from last meeting

2. Project Status

(2-3 minutes each)

• Data-In (Ingest)

  • Frances: currently HPA run 6 going in for prod 71 and idr0069

• Data-Out (UI/Search)

  • Tagged yesterday

  • Finishing [notebook

    prep</u>](https://github.com/ome/training-notebooks/pull/40) for next workshop (NZ). This includes Fiji, Orbit, Ilastik support then hold off on integration

  • Deployment of vae fixed: gitlab-runner upgrade required

  • Figure 4.1.0 did not get released due to another failure in

    travis. Need to investigate issue (not figure related)

  • Resources to focus on tasks with higher priorities (see below)

  • Notebook PR with Orbit and Fiji code.

  • After that, hold off integration of other tools for a bit.

• Python3

  • Slowly fixing tests…

  • [Unicode/String

    notes</u>](https://docs.google.com/document/d/1GnmD0CLhRehb0CTh-BBro6uxmSCYqZlfeQnKLnU-QUs/edit#)

  • Getting others involved (failure chats)

  • http://python-future.org/

  • Merging? → effect on latest-ci, will break but highlight this as

    ‘top priority’

    • Will allow new PRs to master instead of Josh’s py3_1 branch

  • Start ramping up next week.

  • Chris: those outside our org may want to access those notes?

  • Josh: few more people on board first, and agree on styles for

    fixes

    • Then create e.g. markdown file in repo.

    • Chris: support py2 and py3?

    • Josh: need to support py2 will decrease over time.

  • Simon: don’t need to support py2 in OmeroWeb

  • Will: so should we focus on py3 first?

  • Josh: not yet, continue to fix failures in py2 first.

• SA (learning/mail): N/A

• Glencoe (Chris)

  • Microservices

    • Tracing infrastructure is almost done. Update vert.x deps at

      same time

    • Can upgrade spring in microservices to use same version as

      OMERO 5.5

    • Also JMX and prometheus, had some good success.

      (diff)

    • Trying to get docs up for this.

    • Simplifying redis

  • Issues with large X/Y image projections.

    • No constraints in UI (needed) to avoid killing server (or

      microservices).

    • Click (web) refresh, click etc workflow causes problems.

    • E.g. “Realtime proj not supported” message.

• Community

  • Josh: Osnabrück

    • Unique IDs for integrating lab notebooks with OMERO
  • This week: Petr & Dom in Freising using workshop server

    and C. Evenhuis (Australia)
    using outreach to run his own session

  • March Paris workshop.

  • Montpellier in Jan

  • Tokyo: metadata meetup in Jan/Feb.

1. AOB

(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)

1. Main Topic

(20-25 minutes plus 15 minutes questions max)

Priorities (Josh/J-m)

Lots of team away next 2 weeks.

• IDR datasets (top priority)

  • Need more help - get involved picking up individual studies.

  • Idr0068 David? Needs BF fix.

  • Too much for Frances and Seb.

• Python3 (need team training, daily discussions etc)

  • Reiterate at next Tuesday’s call