2021-02-23
Attending: Will, Seb, Dom, June, Jason, Jean-Marie, Josh, Petr, Wilma, Frances, Melissa, Andreas, Kevin, Chris, Erin, Emil
Start: 2:00 pm UK
Project Status
(2-3 minutes each)
- IDR
- BF issue with idr0093 - Melissa has fix, being tested. Hopefully in next release
- Next release also includes with idr0090 (malaria) and idr0099 (beetle)
- NGFF
- Benchmark status (3D, AWS, snapshots)
- 3D still generating data - 3TB imaris to zarr to OME-TIFF
- 1024 cube, 500 time points
- Merging branches so we don’t need to use snapshots in prep for AWS
- Community calls & the roadmap
- Well attended this morning
- Some interest in driving spec - collections, scales, polygons etc.
- Separate HCS spec from core etc.
- Zarr/N5 Java edition tomorrow evening (8 CET)
- Include Java community members
- Discuss v3 implementation in Java
- Paper - JRS
- Methods for Benchmark, need a couple of paragraphs
- Updates to draft text - recently rewritten, feedback welcome
- Releases
- insight 5.5.16 (out). dmg built by GHA to be looked at
- iviewer 0.10.2 (out)
- figure: one more PR to rebase then merge
- going over conda packages
- web: work-in-progress
-
SA: N/A
- Glencoe
- focus on ngff etc.
- also masks - metadata in OME-Zarr, balance with domain-specific metadata
- HCS - implicit grouping good, but non-python API can be tricky. Java: groups need creating manually
- Josh: jzarr might be doing this wrong. Might be worth raising
- labels working OK with current spec (nested under image)
- close to telling users to write their data, masks etc into OME-Zarr
- Community
- forum: Prepping and including ROI masks - Will to check iviewer
- OME 2021 Meeting?
- Jason - covid status not changing much
- Do we want to have a single meeting? Remote etc more flexible
- JM: pick a day, let users choose schedule?
- Josh: less time over more days is less stressful
- TBD: pre-recorded videos, # of days, continugous, big topics, exclude NGFF since it’s bimonthly
- Jason will reply to forum “We’re discussing it”
- Sanger and 4DN projects
- challenge to manage communication channels
AOB
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
Main Topic
(20-25 minutes plus 15 minutes questions max)
