2021-06-29
Attending: Dom, Frances, Josh, Seb, David, Jean-Marie, Chris, Khaled, Andreas, Wilma, Melissa, Muhanad, Erin, Kevin, June, Emil
Start: 2:00 pm UK
Project Status
(2-3 minutes each)
- IDR
- Releasing tomorrow! incl. HPA run 10 (image issues sorted) + 2 new studies. Stats upcoming
- Upcoming workshop at EBI
- NGFF
- hyperspectral use-case (re-emergence of D.O.o.F)
- similar to historical FLIM use case
- good time to capture new things
- JSON-LD discussion at ELMI
- following J. Bogovic’s presentation, good discussion around metadata. Working on wrapping jq
- Zarr V3 work reboot
- zarr-python contributions could use more reviewers
- NGFF paper
- working towards v5. Upcoming clean-up + making v5 read-only and refer to lines. Deadline for sending paper is July 19th
- Releases
- N/A this week
- OMERO.insight announcement
- OMERO.mde paper upcoming
- Glencoe
- Introducing Muhanad Zahra (biological data science specialist at Glencoe Software)
- Upcoming work on lossy compression in Zarr. Will raise the chunking/dimension order issue
- Josh: hoping to be able and drop the dimension order over the summer
- Seb: any suspicion we might come back to the Samples dimension problem (cf recent aicsimageio discussions)
- Chris: people can extend their modality. Certainly losing some metadata at the moment. Harder for the client which has to guess
- Josh: multiple napari threads. Each layer == 1 color map. Want to attach metadata. Introducing some form of object model. Similar question for Zarr i.e. introduce some layer concept?
- Similar problems with original file formats e.g. YCbCr etc
- Moving towards releases of bioformat2raw/raw2ometiff/isyntax2raw
- Also making the latter more easily installable by the community
- Community
- No planned workshop post EBI analysis in Summer
AOB
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
Main Topic
(20-25 minutes plus 15 minutes questions max)
