2023-02-14

Attending: Will, Frances, June, Jean-Marie, Dom, Khaled, Richard Acton, Tom, David, Seb, Chris, Kyle, Kevin, Andreas, Jason, Muhanad, David Stirling, Erin, Petr, Melissa,

Start: 2:00 pm UK

Accepting minutes from last meeting

Project Status

(2-3 minutes each)

• IDR (Frances):
  • submissions, search-engine, SSBD notebook all in progress
    • overlap found between SSBD GO terms and IDR
  • Software upgrade: 16 studies need converting to NGFF
• OMERO:
  • omero-web Django upgrade
  • rendering def PR approved - will merge and prep release
  • readthedocs issues - intermittant redirect failures
• Bio-Formats (David):
  • preparing for release: artifacts built and deployed
  • 6.12.0 release today, after final testing
  • Don’t hold off due to readthedocs issues
• NGFF (Will):
  • Paper getting close
  • omero-web-zarr - PR to update to v0.3 and v0.4 NGFF
  • ome-zarr-catalog - load data and thumbnails from NGFF
• GerBI (Tom)
  • Hive work in progress again - installing OMERO
  • Preparing 2nd Hive for data processing - will connect to OMERO - looking good
  • Still can’t connect to OMERO on Hive 1 via python (not OMERO-specific issue)
  • JM: French meeting interested in doing same
• Glencoe (Chris)
  • see omero-web above
  • consider rtd remove adds
• Community
  • LCI Karolinska Institute workshop remote tomorrow
  • GBI course on 24th of February, remotely, two talks by Jean-Marie
  • Richard: looking to test Zarr performance on new hardware
  • OME-SSBD Visit:
    • Folder
    • Draft Agenda

AOB

(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)

Main Topic

(20-25 minutes plus 15 minutes questions max)