2023-05-09

Attending: Will, JM, Frances, Muhanad, Khaled, David, Kyle, Andreas, Melissa, Josh, Maadhav, Chris, Kevin K.

Start: 2:00 pm UK

Accepting minutes from last meeting

Project Status

(2-3 minutes each)

• IDR (Frances):
  • Last call for comments on searchengine permissions
  • EBI Globus connection issues - meeting last week.
  • EBI microscopy workshop prep - 25th and 26th May
  • Will: need to test ZarrReader PR on previously-imported NGFF Plates
• OMERO (Andreas)
  • OMERO.web and Django security release #465 - needs final test
  • Changelog ready.
  • JM: Dundee nightshade switching from LifeSci to UoD LDAP
  • portalocker pytable testing
• Bio-Formats (David)
  • ome-model documentation has been moved to new repo ome-model-documentation. Doc on rtd. If comment create an issue before we switch.
  • 6.13.0 release this week but not for Fiji yet (waiting on dependenices upate)
  • ZarrReader work ongoing
  • JM: release workflow more automation to make it easier?
    • David, yes some possibilities
  • JM: ome model docs to readthedocs. Feedback?
• NGFF (Josh)
  • Repo reviews
  • Papers: OME-Zarr & SpatialData
    • both updated on bioarchive
  • ZEP0001 vote - May 6th deadline
    • some implementations not on board (lacking capacity), e.g JavaScript
• GerBI
  • NFDI TA1
    • Flamingo (light sheet microscope kit) -> write OME.tiff
    • spectral images - each pixel is array of values
  • no response on webtagging
• Glencoe
  • Current activity all discussed above
  • Attending JupyterCon this week
• Community
  • Petr at Porto
  • image.sc calendar for events

AOB

(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)

Main Topic

(20-25 minutes plus 15 minutes questions max)