2024-07-23
Attending: Frances, Dom, J-M, Seb, Josh, David, Tom, Kevin, Chris, Khaled, Andreas, Melissa, Kyle, Jason
Start: 2:00 pm UK
Project Status
(2-3 minutes each)
- IDR (Frances)
- working on next release, including BF fix from David, idr0043 (svs fix)
- planning to include microservice (under testing)
- targeting next week
- OMERO
- omero-py (done), omero-web, openmicroscopy releases upcoming
- Andreas: OMERO.web: tests for tables API, if they pass then merging last couple of PRs for the next OMERO.web release (in next days)
- Bio-Formats
- NGFF (Josh)
- Several DACH hackathons upcoming
- Nextflow in Tübingen in September
- SpatialData in Basel in November (limited space)
- OME-Zarr in Zürich in November
- “bioimaging interoperability” in Kassel in December
- Challenge
- IDR data for Challenge (Jason)
- Q: what data would IDR submit? All data is great, but depends on what’s in scope, what can be used today, what’s useful today?
- IDR can drive these questions. Would we contribute something for which there isn’t a tool (today). Think so! Drive development/benchmarks.
- Need to figure out who is doing conversion.
- Rich datasets that may never be in a common spec. Try it out.
- FLIM: https://forum.image.sc/t/online-meeting-a-zarr-based-format-for-flim-raw-data/99244
- GerBI
- Josh: NFDI looking for metadata mapping use cases
- Josh: FoundingGIDE Update
- IDR metadata model definition, i.e., from idr0000
- multi-server search work (being defined). some PR cleanup first.
- ontology landscape review
- hackathon in November in Japan. feel free to join :smile:
- Tom: opened a couple of PRs; nothing urgent (holidays)
- LUTs: https://github.com/search?q=org%3Aome+author%3Atom-tbt+LUTs&type=pullrequests
- Glencoe
- preparation for SPI2 (beginning of September)
- Community
AOB
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
Main Topic
(20-25 minutes plus 15 minutes questions max)
