tags: Tuesday —

2024-08-06

Attending: Will, Dom, Frances, Khaled, Chris, Jason, Kyle, Melissa, David, Andreas, Erin, Kevin, David S,

Start: 2:00 pm UK

Accepting minutes from last meeting

Project Status

(2-3 minutes each)

• IDR (Frances)
  • ongoing work on ngff-challenge
  • idr00157 plant study. v2 conversion needed first. Initial upload to s3 embassy bucket
  • idr0090 already in v2. Dom testing conversion to v3
  • idr0044 - sharding example
  • Dom, using a nextflow workflow on pilot-zarr3-dev. Was looking into BatchConvert which is nextflow based as well, but in my option too complex for the task.
  • Will: idr0044 images very big - can’t load all at once
  • idr0138 unlikely to be included in next release
  • David looking at microservices. svs fix for idr0043. bioformats2raw dependency resolved. To be included in release next week
• OMERO (Chris)
  • omero-py PRs open for review
  • server build including old jars due to ivy upgrade from 2.4 to 2.6. Seems to include some test dependencies https://forum.image.sc/t/critical-old-and-unsafe-log4j-jar-file-in-omero-5-6-12/100016/3
    • plan to release 5.6.13 next week when JM/Seb back
    • Not a security issue as jars aren’t used
• Bio-Formats (Melissa)
  • 7.3.1 release notes updated
  • Some PRs open
• NGFF
  • ngff challenge slides at https://drive.google.com/file/d/1rGh5zkA7jD42ehNTbJh4BXN1G8nRpOVB/view

• GerBI

• Glencoe
  • few people off over next week(s)
• Community (Jason)
  • BINA Community Meeting OME meeting end of May at MBL
  • OME Resources, e.g. who runs artifactory?
    • Chris - hard decsions on what we can support

AOB

(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)

Main Topic

(20-25 minutes plus 15 minutes questions max)