tags: Tuesday
—
2024-09-10
Attending: Will, Petr, JM, Frances, Andreas, Seb, Tom, Khaled, Melissa, Kyle, Jason, Josh, Chris, Maadhav
Start: 2:00 pm UK
Project Status
(2-3 minutes each)
- IDR (Frances)
- Prod123 released this morning. Includes new study (idr0138), software upgrades and microservices.
- NGFF Challenge: all plates in idr0090 converted as well as idr0044. Moving on to all existing OME-Zarr data.
- JRS: where do we do announcements? Twitter, LinkedIn?
- FW: idr0138 already announced on Twitter this morning.
- OMERO
- Andreas: several things tagged. Few outstanding PRs. Will get those released when there’s a green light
- Petr (UoD IT): migrating aged GPFS to ESS. Testing performance, etc.
- Melissa: https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-test-repo/182/ as a valid build?
- J-M: insight build is red which blocked release. Pushing as soon as Dom is back.
- Bio-Formats
- Melissa: looking into policies for community response, etc.
- JRS: working on additional public response (comments welcome when able)
- OME-TIFF writing performance as a next topic
- NGFF
- GerBI
- ontop & uniprot (Josh)
- Needs
- extending that configuration
- figure out security (or public data only)
- having a mechanism for discovering endpoints
- JRS: links to IDR is interesting.
- linking to random OMERO’s is … in a different category
- perhaps for LLMs?
- Tom: helping people with data at HHU
- Glencoe
- Gaining experience with large OMERO.tables using the latest improvements and endpoints introduced in OMERO.py and OMERO.web
- Community
- Wellcome Funding
- few positions funded and a few elsewhere
- was a Foundation / Scale-up model.
- currently rebudgeting
- focus on NGFF
- Few other grants pending
- structure consistent with bridging the OME org to include others who have resources committed
- BINA org of OME2025 Community Meeting
- MBL, April 28 - May 1 (or so)
AOB
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
Main Topic
(20-25 minutes plus 15 minutes questions max)
