2024-10-08

Attending: Will, Josh, Petr, Dom, Kyle, Tom, Khaled, Seb, Frances, Chris, David S, Melissa,

Start: 2:00 pm UK

Accepting minutes from last meeting

Project Status

(2-3 minutes each)

• IDR Frances: idr0158 released today. Multiplexed immuno study. 40 antibodies. New mapr config for antibodies.
• Meeting on IDR search on Thursday morning. e.g migrate away from mapr. Small steps starting ASAP.

• NGFF challenge. Samples viewer (work in progress) to show converted zarr v3 data.

• OMERO

• Bio-Formats: Melissa: on track for BF 8.0.0 release week of 21st.

• NGFF
  • Josh: Challenge:
    • https://ome.github.io/ome2024-ngff-challenge/ now live
    • Few sites dribbling in (Crick, Jülich, Göttingen)
  • RFCs
    • https://ngff.openmicroscopy.org/rfc/5 published
    • RFC-3 still needs work
    • Reviewers to contact
• GerBI:
  • Tom: OMERO IT Workshop in Heidelberg next week. 22 participants from 11 institutions: core facility + IT together. :handshake:
    • Petr: How? What will you concretely set up and how ?
    • Tom: first day discuss & get them to interact with each other, same language. second day is more practical on VMs (provided by IT themselves) to run ansible playbooks, explain /Files, etc.
  • FAIRDOM presentation last week at AIMM/BINA. YouTube link to come…
  • BioMedical meeting in Heidelberg (Nov): https://indico.dkfz.de/e/nfdi-biomed (“metadata”)
  • Spatial data meeting in Berlin (Dec): https://indico.dkfz.de/event/1112/
  • Continued work on OMERO-vitessce integration
  • Registry of OMEROs?
• Glencoe: Chris:
  • Elrig Drug discovery London Meeting last week (David)
    • SPI2 were running one of the 4 tracks. Not a lot of imaging in general but presentation well received.
• Community
  • Japan: workshops 4th & 6th November.

AOB

(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)

Main Topic

(20-25 minutes plus 15 minutes questions max)