tags: Tuesday —

2025-03-04

Attending: Will, Petr, JM, Josh, Kevin, Seb, Frances, Khaled, Andreas, Kyle, Melissa, Chris, Erin, David, Jason

Start: 2:00 pm UK

Accepting minutes from last meeting

Project Status

(2-3 minutes each)

• IDR Frances:
  • importing idr0156 into idr-next. Big study.
  • plan to include idr0164 in next release too
  • Dom testing omero-zarr-pixel-buffer on a pilot with a plate
  • idr-gallery is now using multi-source search engine on idr-testing.
• OMERO
  • Andreas: One more PR to merge for next omero-web release
• Bio-Formats Melissa:
  • Plan to release 8.1.1 tomorrow
  • See https://github.com/ome/bio-formats-documentation/pull/417 https://github.com/ome/www.openmicroscopy.org/pull/779.
• NGFF
  • Still focused on ZEP9 “How to extend zarr”.
    • Could take another month
  • Then likely moving on to a 1.0 roadmap proposal, hopefully ready to present at OME meeting, end of April
  • Anatomical orientation (RFC-4) review coming
  • FYI:
    • https://github.com/hms-dbmi/vizarr/pull/242 (labels)
    • https://github.com/hms-dbmi/vizarr/pull/254 (OME-TIFF) - refactor to viv?
    • https://github.com/ome-zarr-models/ome-zarr-models-py - call on what’s next?
  • Will: https://github.com/BioNGFF/ome-zarr.js/pull/1 used for
    • https://github.com/ome/omero-figure/pull/619 Zarr Figures
    • https://github.com/ome/ome-ngff-validator/pull/46 Thumbnails
  • JM: BioNGFF web viewer meeting tomorrow: 10:00.
    • Likely 10:30 for meetings every 2 weeks after that
• GerBI (Josh)
  • TIM (17th March) preparation in progress
  • working on several ELMI submissions
• Glencoe
  • outreach around London & Cambridge
  • ABRF in Las Vegas, end of March
• Community
  • Petr: Submitted ELMI workshop abstract
  • EMBL EBI microscopy course regular meetings, using data from OME2024-ngff-challenge

AOB

(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)

Main Topic

(20-25 minutes plus 15 minutes questions max)